Sequence Organization

Sequence Alignment

NPS@ClustalW – allows you to also run 2ndary structure prediction

Clustal Omega

Simple Phylogeny

Signal Peptide Prediction

Glycosylation

NetNGlyc1.0Server - sequence-based prediction of N-glycosylation

NetOGlyc4.0Server – sequence-based prediction of O-glycosylation

pdb-care – checking coordinates of glycosylation chains

TMD Topology Prediction

BLAST

BLASTP – for proteins

BLASTN – for DNA

Molecular Biology

MBCF Oligo Calculator – for calculating Tm of oligo