Small Compound Model 

Chem_info_converter

PRODRG Server

 

JSME_chem_drawer

 

ZINC

 

Coordinate Check

Molprobity – Model diagnosis and repair. Also check the tutorial@CSHL

pdb-care – checking coordinates of glycosylation chains

Diffraction Analysis

Absorption edges – Sasaki Table (from Prof. Suzuki’s website)

Absorption edges (easy) – (U. Washington website)

Solvent content/Vm – manual calculation recommended for students

Wavelength (KeV/Å) – (E = hc/λ or E (eV) = 12.4/λ (Å)) (UCLA site)

Structure Comparison

DALI server http://ekhidna2.biocenter.helsinki.fi/dali/

TopSearch https://topsearch.services.came.sbg.ac.at/

CLICK http://cospi.iiserpune.ac.in/click/

FATCAT http://fatcat.burnham.org/fatcat-cgi/cgi/fatcat.pl?-func=search

VAST https://www.ncbi.nlm.nih.gov/Structure/VAST/vast.shtml

PDBeFold http://www.ebi.ac.uk/msd-srv/ssm/cgi-bin/ssmserver